Broken mods after cleaning with TES5Edit

[AustrianPsycho]

After suffering from CTD's and instabilities for a while, I discovered that I needed to clean my dirty edits with TES5Edit. Now that I have cleaned the files that LOOT told me to clean

Update.esm, HearthFires.esm, Dawnguard.esm, Dragonborn.esm, BosmerArmorMATY743.esp, Cloaks.esp, Distant DetailHF.esp, ethereal_elven_overhaul.esp, SoS - TheWilds.esp, StavesofSkyrim.esp, UFO - Dawnguard AddOn.esp, and UFO - Ultimate Follower Overhaul.esp

my CTD's happen much less frequently. After cleaning Dawnguard.esm, it still had 6 ITM records, which was strange. Unfortunately, a new problem has arisen from the ashes of my old one. Now, some of my mods have stopped working or behave/work differently than they did before. Also, strangely enough, my in-game physics have completely changed. Before, I would need to loot every item from a corpse before I could barely drag it around. Now, I can lift a fully armored body completely above my head and it will spin around comically (similar to the way those skinny, bubble helmeted aliens did in Fallout).

 

Here is my load order (updated):

 

Skyrim.esm

Update.esm

Unofficial Skyrim Patch.esp

Dawnguard.esm

Unofficial Dawnguard Patch.esp

HearthFires.esm

Unofficial Hearthfire Patch.esp

Dragonborn.esm

Unofficial Dragonborn Patch.esp

Falskaar.esm

Wyrmstooth.esp

ApachiiHair.esm

ClimatesOfTamriel.esm

JSwords.esm

Omegared99-Compilation.esm

RSkyrimChildren.esm

SPIKE.esm

dragonborngalleryNEW.esp

SkyMoMod.esm

NPCs.esm

Cutting Room Floor.esp

Black Swordsman.esp

JSwords_Load_Screens.esp

Chesko_WearableLantern.esp

RaceMenuPlugin.esp

AHZmoreHUD.esp

HelmetToggle2.02b.esp

BetterQuestObjectives-DBForevertoMisc.esp

breezehomenoreq.esp

BetterQuestObjectives-Hearthfire.esp

Chesko_LoreBasedLoadingScreens.esp

UFO - Dragonborn AddOn.esp

BreezehomeNoReq-hf-Patch.esp

DSerULG.esp

LeftHandRings.esp

Animated Dragon Wings.esp

CalienteVanillaArmorTweaks.esp

more plants all extra.esp

BloodmoonRising.esp

ClimatesOfTamriel Falskaar.esp

Differently Ebony.esp

HearthfireMultiKid.esp

HearthfireMultiKid_LastName.esp

dD-No Spinning Death Animation.esp

RSChildren - Complete.esp

RSChildren_PatchUSKP.esp

Convenient Horses.esp

IndividualizedShoutCooldowns.esp

dD - Realistic Ragdoll Force - Realistic.esp

Better distant LOD waterfalls V3.esp

EnchantedArsenal.esp

EnhancedLightsandFX.esp

Eyes of Aber.esp

Hothtrooper44_Armor_Ecksstra.esp

Footprints.esp

Footprints - Ash.esp

Ghosu - Weapon Pack 1.esp

iHUD.esp

Immersive NPC in the dark.esp

PalistovSpinningArrows_ImmersiveWeapons.esp

Lost Art of the Blacksmith.esp

ArmorOfIntrigue.esp

Omegared99-WeaponSets.esp

Purewaters.esp

Purewaters-Falskaar.esp

RaceMenu.esp

LeftHandRings - Dawnguard.esp

SkyUI.esp

AchieveThat.esp

Dual Sheath Redux.esp

Skyrim Radioactive.esp

DragonbornGalleryPatchV2.esp

ethereal_elven_overhaul.esp

ELFX - Exteriors.esp

CollegeOfWinterholdImmersive.esp

SkyRe_Main.esp

SkyRe_Plugin_BerserkBlackSwordsmanArmor.esp

BetterQuestObjectives.esp

Bounty Gold.esp

BetterQuestObjectives-Dawnguard.esp

JKs Cities and Towns V1.0.esp

Radiant and Unique Potions Poisons and Booze.esp

AOS.esp

Immersive Sounds - Compendium.esp

Immersive Sounds - Aural Assortment.esp

DeadlySpellImpacts.esp

DeadlySpellImpacts - Two Fire.esp

Clanking Armor.esp

dD - Enhanced Blood Main.esp

dD-DG-DB-MonsterMod EBT Patch.esp

dD-Reduced Wound Size.esp

dD-Reduced Splatter Size.esp

AOS2_DSI Patch.esp

ISCompendium AOS Patch.esp

AOS2_EBT Patch.esp

BetterQuestObjectives-SkyRePatch.esp

TakeNotes.esp

Tes Arena - Skyrim Frontier Fortress.esp

Book Covers Skyrim.esp

Lore Weapon Expansion - Goldbrand.esp

BCS_Skyre_Patch.esp

Skyrim Immersive Creatures.esp

Descentintomadness2.esp

ELFXEnhancer.esp

Helgen Reborn.esp

Distant Detail.esp

MoonAndStar_MAS.esp

MoonAndStar_ImmersionPatch.esp

MoonAndStar_Undeath_compat.esp

Guard Dialogue Overhaul.esp

Weapons & Armor Fixes_Remade.esp

PalistovSpinningArrows.esp

SkyRe_SIC Crossbowfix.esp

TreaclemanFalskaarPatch.esp

UFO - Dawnguard AddOn.esp

Undeath.esp

BHTNF_Eli.esp

ISCompendium SkyRe Patch.esp

MagicArmorVisuals.esp

ISAA SkyRe Patch.esp

SoS - The Wilds.esp

SoS - Civilization.esp

AOS2_CoT3_1_patch.esp

CWIELnFXPatch.esp

Lore Weapon Expansion - Relics of the Crusader.esp

OBIS.esp

Distant DetailHF.esp

OBISDB.esp

OBISDB-FaceMasksFix.esp

SoS - Civilization-PatchSPO.esp

Thunderchild - Epic Shout Package.esp

Improved Dragon Shouts.esp

Improved Dragon Shouts - Dragonborn.esp

DragonFire.esp

DragonFire-Dragonborn.esp

DragonFire - Improved Dragon Shouts Compatibility.esp

More Draconic Dragon Aspect - Wings and Tail.esp

More Draconic Dragon Aspect - Powered Edition.esp

Improved Dragonrend Shout.esp

Skyrim Immersive Creatures - DLC2.esp

Improved Dragon Shouts - Dawnguard.esp

SoS - The Dungeons.esp

SkyRe_EncounterZones.esp

Druidessentials.esp

HarvestOverhaul.esp

HarvestOverhaul_SkyRe_Patch.esp

ImmersiveSpells.esp

Immersive Spells and Lights SkyRe Patch.esp

JK's Falkreath.esp

Thunderchild Wyrmstooth Patch.esp

Thunderchild - SkyRe Compatibility Patch.esp

Falskaar Undeath Skyre Patch.esp

VioLens.esp

WetandCold.esp

AOS2_WetandCold Patch.esp

Wintermyst - Enchantments of Skyrim.esp

aMidianBorn_ContentAddon.esp

Lore Weapon Expansion.esp

Hothtrooper44_ArmorCompilation.esp

aMidianborn_Skyforge_Weapons.esp

Ket_WEAPONIZER.esp

PalistovSpinningArrows_Dawnguard.esp

TradeRoutes.esp

TradeRoutes-SkyRe-Patch.esp

SkyRe_Plugin_JaySuSSwords_1.3D.esp

JK's Dawnstar.esp

Run For Your Lives.esp

Cloaks.esp

1nivWICCloaks.esp

Lore Weapon Expansion - Daedric Crescent.esp

1nivWICSkyCloaksPatch.esp

OBISCloaks&IA7.esp

UFO - Ultimate Follower Overhaul.esp

CWINPCApachiiSkyHair.esp

Breezehome-hf-CTD-fix.esp

Inigo.esp

HeljarchenFarm.esp

AmazingFollowerTweaks.esp

BetterQuestObjectives-AFTPatch.esp

Immersive Weapons.esp

Lost Magic.esp

CWIDawnDragonPatch.esp

LostMagicPart2.esp

WeaponsArmorFixes_ImmersiveWeapons_Patch.esp

SkyRe_EnemyScaling.esp

DBM_SkyRe_Patch.esp

Unique Uniques.esp

AOS2_WAF Patch.esp

BetterQuestObjectives-UFOPatch.esp

WindstadMine.esp

JK's Morthal.esp

StavesofSkyrim.esp

SMIM-Merged-All.esp

HarvestOverhaulCreatures.esp

Hidden Hideouts of Skyrim City Edition - Merged - No Map Markers.esp

Immersive Patrols II.esp

SFO - Dragonborn.esp

FNISspells.esp

JSwordsDistributionBalancePlugin.esp

BosmerArmorMATY743.esp

LostLongSwords.esp

Book Covers Skyrim - Lost Library.esp

BCSLL-SKYREorPERMA Patch.esp

DBM_BCS_Patch.esp

DBM_IWIA_Patch.esp

DBM_IW_Patch.esp

DBM_IA_Patch.esp

Faction Crossbows.esp

Cloaks - Dawnguard.esp

LrsamwaysExpandedSkyrimWeaponry.esp

Skyrim Flora Overhaul.esp

ResurrectDragon.esp

SkyRe_StandingStones.esp

SkyRe_Races.esp

Bandit Patrols.esp

SkyRe_EnemyAI.esp

AesirArmor.esp

Hunterborn.esp

Extended Encounters.esp

HBetterBows.esp

SkyRe_Plugin_NicoroshiCreations_1.1.esp

Dr_Bandolier.esp

SkyRe_Plugin_BetterBows_1.4.1.esp

UniqueBows.esp

BosmerArmorMATY743PART1.esp

BosmerArmorMATY743PART2.esp

BosmerArmorMATY743PART3.esp

BosmerArmorMATY743PART4.esp

Bosmer Armor SkyRe Patch.esp

arnima.esp

Brevi_MoonlightTales.esp

BetterQuestObjectives-MoonlightPatch.esp

SkyRe_Combat.esp

Apocalypse - The Spell Package.esp

Apocalypse - More Apocalypse.esp

Apocalypse - SkyRe Compatibility Patch.esp

Apocalypse - More Apocalypse - SkyRe Compatibility Patch.esp

ForgottenMagic_Redone.esp

ForgottenMagic_Redone_SkyRePatch.esp

SkyRe_Plugin_BowofIorveth_1.2.esp

SkyRe_Plugin_DreadKnightWeaponSet_0.99.esp

Dread Knight Weapon Set.esp

WeaponsArmorFixes_ambSkyforge_Patch.esp

AOS2_SkyRe Patch.esp

AOS2_SkyRe-AFTER Patch.esp

SkyRe_Plugin_DaggerCraft_1.3.esp

Unique Unique's_Skyre Patch.esp

Insanity's Red Eagle's Bane.esp

WintermystPatcher.esp

AMB Glass Variants Lore.esp

Wintermyst - SkyRe Compatibility Patch.esp

Alternate Start - Live Another Life.esp

ASLAL - Hearthfire Support.esp

Pre ReProccer WAFR IA7 IW UU aMidianSS Content Addon Patch.esp

Dual Sheath Redux Patch.esp

ReProccer.esp

Post ReProccer Fixes IA7 IW UU aMidianSS Content Addon Patch.esp

The mod in question (that I have noticed so far) is Immersive Spells and Light (there used to be more, but as far as I can tell they just stopped not working). Immersive Spells and Light no longer has any in-game effect (i.e. no lighting emanating from weapon enchantments or spells), although the mod is successfully installed via NMM and the in-game MCM menu is fully functional. I can notice different lighting effects on my characters first person arms and weapon depending on what spell I have equipped in the other hand, but it no longer lights up the environment. I've tried creating a new save game and re-installing the mod.

The physics change has me completely boggled. I have Realistic Ragdolls and Force, and i'm pretty sure SkyRe changes some physics as well, and prior to the cleaning they both seemed to be working. I don't remember what vanilla physics were like, but i'm inclined to believe that that is what I've got in effect right now.

I backed up all the esp's before I cleaned them, so I have the dirty and cleaned versions just in case. I can also always validate my game's files via steam to reacquire the dirty Bethesda files, so if I botched the actual cleaning of the files I can always just redo it. Any help or insight would be appreciated.

Edited January 9, 2015 by AustrianPsycho