New problem here, trying to get this fixed in order to solve my other problems.
So, I've recently been trying to download a mod-list with a handful of mods. (Ultimate Immersion's Micro Mod-list)
I had a fresh install, and decided to use Vortex and a mod manager.
I downloaded everything properly, but ran into a problem when I tried to get some body physics working. I had some help with this problem on a different post, but I was told that I have to get SKSE64 working first.
When I first tried loading into SE with SKSE64 loader and my mods, I got a few messages saying I had the wrong version and my SKSE64-dependent mods wouldn't be able to work properly. I checked over 10 times that I had the right version, matching with the latest SE version also. Reinstalled SKSE64 so many times that I can't even remember, yet still it didn't work.
So, I got a reinstalled Skyrim SE with absolutely no mods and no mod manager. The only thing I manually installed was SKSE. To my surprise, it worked. I used the loader, ran the command "getskseversion" in console and everything was working. (showed the version)
I then decided to install Vortex and set it up with my Skyrim. All of a sudden, SKSE doesn't work anymore. I ran the loader after the Vortex installation and the game appeared differently than what it was before I downloaded Vortex. The game started in a bordered screen, and when I went to type in the getskseversion command in console, it said that the command was invalid (obviously stating that SKSE isn't working).
I'm really confused on what to do. I feel like it has something to do with the mod manager messing with the SKSE files and Skyrim files but I really have no clue. Hopefully I can get some answer to this, but as of now I'd have to wait.