In response to post #30999350. #31002655 is also a reply to the same post. You need start game and when laucher is active, recheck mods in NMM(disable and then reenable esp files and then start game, works for me.
As long its FALLOUT, i dont care one bit, because i am extremely loyal to Fallout, and i dont play other titles, well until i buy better PC wich im planing to do.