Looks like a basic Load Order issue. Have you tried running it in LOOT then FO4edit to check for conflicts? I know that Eli_armor Compendium and My_Minutemen have an issue with leveled lists but that's easily fixed with a patch.
My Load Order: (Stable for the last 6 months (ish).. Can say as this will work for you as I have highly modified some mods to be compatible with each other)
FPS Drop in Commonwealth - 60 - 0
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Looks like a basic Load Order issue. Have you tried running it in LOOT then FO4edit to check for conflicts? I know that Eli_armor Compendium and My_Minutemen have an issue with leveled lists but that's easily fixed with a patch.
My Load Order: (Stable for the last 6 months (ish).. Can say as this will work for you as I have highly modified some mods to be compatible with each other)
Fallout4.esm=1
DLCRobot.esm=1
DLCworkshop01.esm=1
DLCCoast.esm=1
DLCworkshop02.esm=1
DLCWorkshop03.esm=1
DLCNukaWorld.esm=1
Unofficial Fallout 4 Patch.esp=1
TrueStormsFO4.esm=1
SettlementKeywords.esm=1
ArmorKeywords.esm=1
HUDFramework.esm=1
BuildingBlocks.esm=1
BuildingBlocks-Foundations_SettlementKeywordsFull.esp=1
HD 2K Texture Pack.esp=1
FAR.esp=1
Jaketastic Chem Retextures.esp=1
Immersive HUD.esp=1
BalconySupports.esp=1
BetterJunkFences.esp=1
EvilViking13_WastelandWalls.esp=1
Eli_Display Shelves.esp=1
dinoshelf.esp=1
dinoshelf_extra_ammo.esp=1
dinoshelf_retex.esp=1
GruffyddsSignsAndPosters.esp=1
GruffyDDS-VIS.esp=1 (MyEdits)
OWR_CraftableDecor.esp=1
OWR_CraftableDecor_CW.esp=1
OWR_CraftableDecor_CW_SKEPatch.esp=1
OWR2_CraftableDecor.esp=1
OWR2_CraftableDecor_CW.esp=1
OWR2_CraftableDecor_CW_SKPatch.esp=1
CR_OuthouseCollection.esp=1
OCDispenser.esp=1
OCDecorator - No Experience.esp=1
ValdacilsItemSorting-00-ValsPicks-DLCVersion.esp=1
ValdacilsItemSorting-CosmeticsByClass.esp=1
ValdacilsItemSorting-ArmorByClass.esp=1
Radrose Usability Enhancements.esp=1
Radrose Usability - Workbench Perk Requirements + Armorsmith.esp=1
OWR_CraftableDecor_SKPatch.esp=1
OWR2_CraftableDecor_SKPatch.esp=1
Realistic Death Physics - ALL DLC.esp=1
Better Generators Test.esp=1 (My Edits)
CROSS_GoreCrits.esp=1
PipBoyShadows.esp=1
Fixed Trading Prices.esp=1
EasyHackingandLockpicking.esp=1 (My Edits)
Armorsmith Extended.esp=1
No Borders.esp=1
AllSetsExtended.esp=1
CBBE.esp=1
CBBE Furry Undergarments Fix.esp=1
LooksMenu.esp=1
KSHairdos.esp=1
AzarPonytailHairstyles.esp=1
Colossus.esp=1
Jacket.esp=1
PA-Quick Animations.esp=1
Lacy Underwear.esp=1
BTInteriors_Project.esp=1
Eli_Armour_Compendium.esp=1
BTInt_Optimization.esp=1
BetterSettlers.esp=1
BetterSettlersCleanFacePack.esp=1
RRTV_HomesAndBunkers_Slog.esp=1
OverpassOverhaul.esp=1
RRTV_HomesAndBunkers_Starlight.esp=1
functionalobjects_vanilla_SMM.esp=1
OCDecorator.esp=1
OCDecoratorDLC.esp=1
SKE_OCD_Patch.esp=1
City of Quincy.esp=1
RRTV_HomesAndBunkers_Oberland.esp=1
BetterShackBridges.esp=1
PCDugWedges.esp=1
PCDugTriangularRevolution.esp=1
WareHouseExt.esp=1
BarnAdd.esp=1
WWE.esp=1
salvagebeacons.esp=1
Radrose - Valdacil Patch - SalvageBeacons.esp=1
Radrose - Valdacil Patch - SettlementKeywords.esp=1
CWSS Redux.esp=1
CWSS_VIS.esp=1
Radrose - Valdacil Patch - BTInteriors_Project.esp=1
My_Minutemen.esp=1
Eli Armor-My Minutemen Compatability.esp=1 (My Edits-includes ViS patches)
OWR.esp=1
OWR_SKEPatch.esp=1
OWR2.esp=1
OWR2_SKEPatch.esp=1
More Where That Came From Diamond City.esp=1
More Where That Came From - Classic.esp=1
Elvani's Track Pack - FIX.esp=1
SurvivalOptions.esp=1
Give Me That Bottle.esp=1
EveryonesBestFriend.esp=1
SurvivalOptions_GiveMeThatBottle_EveryonesBestFriend_Patch.esp=1 (My Edits-Custom)
Companion Infinite Ammo.esp=1
AA Better Companions - No Conflicts.esp=1
TrueStormsFO4-FarHarbor.esp=1
TrueStormsFO4-EarlierSunsets.esp=1
TrueStormsFO4-EarlierSunsetsFH.esp=1
TrueStormsFO4-NukaWorld-FH-Compat.esp=1
Radrose - Valdacil Patch - TrueStormsFO4.esp=1
True Nights v03.esp=1
EnhancedLightsandFX.esp=1
BetterSettlersMostlyFemale.esp=1
BetterSettlersNoLollygagging.esp=1
Marmo1233 - Immersive Settlers.esp=1
Radrose - Valdacil Patch - Marmo1233 - Immersive Settlers.esp=1
SettlementMenuManager.esp=1
UncappedSettlementSurplus.esp=1
DD_Khassar_De_Templari_Increased_build.esp=1
PlayerHeadTracking.esp=1
PiperandMacCready New Look.esp=1 (Merged from two separate mods)
EAMR.esp=1
WastelandScarf.esp=1
WastelandScarf_VanillaCrafting.esp=1
AnS Wearable Backpacks and Pouches.esp=1
AnS Wearable Backpacks and Pouches - AWKCR.esp=1
ValdacilsItemSorting - Wearable Backpacks and Pouches TAGS.esp=1
Survivalist GoBags-Chem Station.esp=1
Radrose - Valdacil Patch - Survivalist GoBags-Chem Station.esp=1
WBO.esp=1
vertibirdgrenade.esp=1
Crafting Workbench.esp=1
Crafting Workbenches - Ammo.esp=1
Crafting Workbenches - Automatron DLC.esp=1
Crafting Workbenches - Faction and Quest Requirements.esp=1
Crafting Workbenches - Removed Crafting Experience.esp=1
Crimsomrider's 1950s Feminine Outfits.esp=1
EndorsCustomCombatArmor.esp=1
LegendaryModification.esp=1
LegendaryModification - DLC Far Harbor.esp=1
WBO-Automatron.esp=1
LegendaryModification - DLC FH - WBO Patch.esp=1
Radrose - Valdacil Patch - LegendaryModification + DLC Far Harbor.esp=1
Armorsmith All DLCs Patch.esp=1
SB_ArmorByClass Keyword Fix.esp=1
EAMR AE Compatability Patch.esp=1
Radrose - Valdacil Patch - Armorsmith Extended.esp=1
EndorsCustomCombatArmor_AEVSDLC_Azar.esp=1
Radrose - Valdacil Patch - My_Minutemen.esp=1
Armorsmith Calyps.esp=1
Armorsmith Deserter X.esp=1
BetterSettlersCCAPack2.0.esp=1
Radrose - Valdacil Patch - Eli_Armour_Compendium.esp=1
Radrose - Valdacil Patch - Immersive HUD.esp=1
SatelliteWorldMap.esp=1