We are not done yet :) Your loot data suggest it needs a bit of clean up. I warn you, I am no pro, so I might say something "not entirely true". To clean the mods we use TES5Edit http://www.nexusmods.com/skyrim/mods/25859/? Again we can rely on Gophers great video tutorials:
Text description copied from http://www.nexusmods.com/skyrim/mods/50214/? : 1. Download LOOT, TES5Edit, Wrye Bash, and Savegame script scalpel. *If you use MO, you have to run these within MO. To do this, click on the gears icon in the toolbar. Select their respective .exe files as the binaries and enter the name of the program as the title. You can now run these programs like you would SKSE or Skyrim. 2. Run LOOT, select "Sort Plugins," and click apply. *Norton thinks that LOOT is malicious. Check the most common problems for a solution. *As of MO version 1.2.1, LOOT is integrated into the sort button. *LOOT 0.6 requires Internet Explorer 11 to generate the reports. This requirement will go away with LOOT 0.7. 3. Go to the "Details" tab and check to see if LOOT recommends any mods be cleaned with TES5Edit. Do not close the results. You'll have to know the order of which ones need cleaning. 4. Run TES5Edit and leave all of your mods checked. Make sure that it doesn't have any errors loading them all. *If it does, you probably have a mod that you shouldn't be using. Find out which it is, get rid of it, and run LOOT again. 5. Close TES5Edit. 6. Run TES5Edit again and ONLY CHECK THE FIRST MOD IN THE LIST THAT LOOT SAYS NEEDS CLEANING. *Other mods will load with it. This is normal. 7. When it loads, right click the mod that needs cleaned and select "Apply Filter for Cleaning." 8. Right click again and select "Remove 'Identical to Master' Records." (Yes, you're sure.) 9. Right click again and select "Undelete and Disable References." 10. Close TES5Edit and save. (No, I didn't mess up the order on that. The save dialog pops up when you hit the close button.) 11. Repeat steps 6-10 for each mod that needs cleaning. DO NOT DO MORE THAN ONE MOD AT ONCE. Just go from step 2 to 11. As it mention, you can only clean one mod at a time, so you have to repeat it several times. In the video Gopher shows the procedure with Update.esm, and you have to do the same with the rest of the mods that LOOT lists as needs cleaning (The yellows at the detailed tab) An examble: Let us say LOOT marks the mod "Skyrim Flora Overhaul" as yellow, and say it needs cleaning in the note. In TES5EDIT you check only "Skyrim Flora Overhaul" and press OK.. Applying filters, cleaning the files and so on is also done to "Skyrim Flora Overhaul" in the list. Just ignore any other mods that are loaded to the list. I do not know about the errors.. Perhaps you can post a screenshot of your LOOT "Detais" tab?