VerdantAtronach

I know it's been a couple of years, but I was having the same issue with this, using BD 3ba conversion. Opening up just the mod and base game in xEdit you can just drag the settings over from dawnguard.esm to bd.esp (just click and drag the header over one another), and it even fixed the missing meshes from the colored variant and restored them to vanilla 3ba. Just leaving this here in case someone else needs it and stumbles across this exact issue.

So, looking into the quests tied to scanning in orbit, I'm not sure that I could figure out how to competently change the dialogue to allow a separate option to declare items, but I could make a separate craft recipe to turn contraband into "declared contraband" at an industrial workbench, that could then only be sold at kiosks, in the law stations around the system, or on the landing pads.

I made a separate patch away from my Online Shopping mod that's a standalone kiosk added to the eye that allows you to trade survey data to Vlad. https://www.nexusmods.com/starfield/mods/11927