Maebalzurakin

I have been playing Darkest Dungeon for a long time without mods, so I am very familiar with the game. I just downloaded a few mods for the first time Better Trinkets Overleveling no longer a problem 3 Trinkets No Abomination Party restrictions The Final Dungeon is now locked in my existing game and when I start new games, the area bosses never appear at all. Is this a thing with MODS in darkest dungeon in general or is one of these messing up my game?