I found that when tring you do the " Eye of Mag " , I has to run it without SKSE an it worked ! Why I don't know ? I just launched from steam to run any of the colleges Quests.
I have had that happen many times. Once it's missing at the start It's burnt into the game till you start a new game. I just turn my pipboy light on so I can see the shadow of the gate lift up.
It may be just me but I like putting food in the frig to keep. But when it comes time to cook something I have to place it back into inv. to craft. Well for that matter any food containers to the crafting system .
https://msdn.microsoft.com/en-us/library/windows/desktop/dd375731(v=vs.85).aspx will help you asign the keys in the place ini file you make from the example file that you rename to place.ini
I found long ago that NMM doesn't load textures or mesh file . So I had to load all if not most of any files with more then an esp mamaully. See Gophers vid on how to do that.
When I installed I had to down load manually Nexus never installs all the files for me for some reason . Should be like 15 items in the interface file when done . That's if your add both hud and INV