Sorry for my english.. But, as far as I know, SkyUi dosnt's using default Flash Player files menu (SWF) and that's why incompatible happens. But, I've got solution this problem! You have to fallow the path where your game is installed (doesn't matter Skyrim or Enderal) and open folder - Data/Interface and after that you have to delete 8 files from there:
1). bartermenu.swf
2).containermenu.swf
3).craftingmenu.swf
4).favoritesmenu.swf
5).giftmenu.swf
6).inventorymenu.swf
7).magicmenu.swf
8).map.swf ( about this one,I'm not sure, I mean about Map.swf lol..)
After that SkyUi new functions interface will be unlocked..Btw, if you not sure about this way of solution, before you will start to delete something please, make BackUP of Interface folder.