In D:\Vortex Mods\Fallout4\Mods was another folder Fallout4, which in turn contained another folder named Mods, the creation dates are of the day where I installed and configured the previous version of Vortex. When I did hit remove on the Fallout4 in the list in Vortex, those folders were deleted. So either the previous version of Vortex or I did mess up during the configuration process a few weeks ago, judging from previous experience, I would guess that I was the one who messed up. :blush: Sorry for stealing your time.