How do I deploy multiple locations instead of singularity?

[PhantomIllusive]

Hey, this is my second thread coming around from the newbie section and it  might be not the right topic so I'm here in this troubleshooting section inquiring about the deployment features.  Here I'm gonna copy and paste my quote: 

Quote

 

I'm new here and the game I'm modding is FF7R.   I'm seeing in Vortex settings, that there aren't many options to deploy the mods in the  game directory other than the most common place that mods go to like  FFVIIRemakeIntergrade\End\Content\Paks\~mods     

The problem is that not all mods go to this specific location. When it comes to graphic and as such,  Some instructed to place it under FFVIIRemakeIntergrade\End\Binaries\Win64 .  Others go to the document in my game folders through C:Drive which isn't even my main game storage that I launched on.  In the mod type, I'm seeing the engine injector and ENB but yet I see that it goes to the base game folder. 

Despite all of that, Vortex doesn't detect any kind of conflict and I don't know if it's safe to launch. 

OFC I can work on it manually and place it  whichever locations it is required however I don't want to lose track and would be nice to keep things organized in my Vortex mod folders so that I don't have to make clean installation again everytime I f up where I couldn't tell which mod files is causing my game or computer to crash.