Enemies Not Hostile

[76NukaGirl]

Suddenly during my playthrough of Fallout 4, enemies began slowly turning non-hostile. This happened late in the game as I'd beaten the institute and all

Now suddenly, Raiders, Junkbots, Rust Devils, and now even Feral Ghouls aren't hostile to me unless I attack once first?

I attempted a New Game to test, spawned in a raider during the tutorial, and instead of mercing Nate and Nora, he just sat at the bar counter non-hostile.

Mod List:

0 0 Fallout4.esm
1 1 DLCRobot.esm
2 2 DLCWorkshop01.esm
3 3 DLCCoast.esm
4 4 DLCWorkshop02.esm
5 5 DLCWorkshop03.esm
6 6 DLCNukaWorld.esm
Unofficial Fallout 4 Patch.esp
Companion Infinite Ammo and Unbreakable Power Armour.esm
WorkshopFramework.esm
ArmorKeywords.esm
NAC.esm
NewCalibers.esp
SimSettlements.esm
Homemaker.esm
Robot Home Defence.esm
Retro_Style.esm
3dscopes-FarHarbor.esp
3dscopes-framework.esp
3dscopes-NukaWorld.esp
3dscopes.esp
50% Fusion Core Drain.esp
ARWCSM - 2 - Full - Vanilla Weights.esp
NAI.esp
WelcometoGoodneighbor.esp
nvvault1080.esp
CombatZoneOverhaul.esp
Stm_DiamondCityExpansion.esp
TrainBar.esp
SimSettlements_XPAC_Conqueror.esp
Better Armour & Weapon Naming - All DLC.esp
Better Armour & Weapon Naming - Far Harbour.esp
Better Armour & Weapon Naming - Automatron.esp
Better Armour & Weapon Naming.esp
BetterJunkFences.esp
CarryWeight25Strength.esp
CarryWeight500.esp
CompanionsGoHome_A.esp
Crafting Workbench.esp
Crafting Workbenches - Ammo.esp
Crafting Workbenches - Ammo Expanded.esp
Crafting Workbenches - Ammo Special.esp
Crafting Workbenches - Automatron DLC.esp
Crafting Workbenches - Junk Items.esp
Crafting Workbenches - Power Armor.esp
Crafting Workbenches - Pre War and Manufactured.esp
Crafting Workbenches - Removed Crafting Experience.esp
CROSS_Cybernetics.esp
CROSS_Jetpack.esp
D.E.C.A.Y.esp
dD-Enhanced Blood Basic.esp
dD - Limited Blood Decals.esp
dD - Small Splatter Size.esp
dD-Action Ragdoll Force.esp
EasyHacking.esp
EFF.esp
EnclaveX02.esp
Extended weapon mods.esp
FAR.esp
GlovesOfTheCommonwealth.esp
Homemaker - Streetlights Use Passive Power.esp
Homemaker - Unlocked Institute Objects.esp
Insignificant Object Remover.esp
Local Map Expanded (Zoom-out Ext. plugin).esp
Locksmith.esp
More Where That Came From - Classic.esp
Move (Get Out the Way).esp
NAC-FarHarbor.esp
NAC-NukaWorld.esp
NewCalibers_extendedWeaponMods.esp
No more monochrome - Color setting for the Pipboy!.esp
SkjAlert_All_DLC.esp
SlowTime.esp
SurvivalOptions.esp
Sim_Settlements_Mayors.esp
SimSettlements_XPAC_IndustrialRevolution.esp
More Where That Came From Diamond City.esp
CarAddon4.esp
MaxwellsWorl.esp
Vivid Weathers - FO4.esp
Vivid Weathers - FO4 - Far Harbor.esp
Vivid Weathers - Natural Bright.esp
Vivid Weathers - Nuka World.esp
WorldCars4.esp
Vivid Waters.esp
Cyber-Light Apartments.esp
Flashy_CrimeAndPunishment.esp
3DNPC_FO4Settler.esp
CorvalhoWidowShotgun.esp
SimSettlements_MegaPack_YearOne.esp
SimSettlements_XPAC_RiseOfTheCommonwealth.esp
3DNPC_FO4Settler_SimSettlements.esp
AWKCR - dnCommonArmor dlc legendaries bugfix.esp
AWKCR - Mod Power Armor Engine Glitch Fix.esp
The Eyes Of Beauty.esp
TheEyesOfBeauty.esp
The Eyes of Beauty Looking Stranger.esp
MoreCars.esp
FarHarborCars.esp
NukaWorldCars.esp
Retro_Style_World_Distribution.esp
Neons NPC Overhaul.esp
TheKite_Railroad_Handmaiden.esp
Brown Face Fix Female.esp
Brown Face Fix Male.esp
Friffy_Holstered Weapons.esp
M9.esp
VisibleWeapons.esp
ClearHazmatHelmet.esp
LooksMenu Customization Compendium.esp
LipstickForMales.esp
2029 Radio- Pipboy Custom Radio 20 Song Version.esp
Splinterz.esp
LooksMenu.esp
Smoke-able Cigars.esp
MoreThirstZapperAmmo.esp
Splinterz_FarHarbor_25%.esp
7 7 AutomatronCountyCrossingFix.esp
Armorsmith Extended.esp
AnS Wearable Backpacks and Pouches.esp
AnS Wearable Backpacks and Pouches - No Crafting Perks.esp
AnS Wearable Backpacks and Pouches - AWKCR.esp
AnS Wearable Backpacks and Pouches - Ballistic Weave.esp
AnS Wearable Backpacks and Pouches - Power Armor Carry Capacity.esp
AnS Wearable Backpacks and Pouches - AWKCR Power Armor.esp
Armorsmith All DLCs Patch.esp
NAC-AE Patch.esp
Rangergearnew.esp
Pip-Boy Flashlight.esp
X-02 PipboyLight Patch.esp

[Wererommel]

That only happens to me when I mess around with console commands. Changing the factions on a randomly generated NPC can change the factions on ALL NPCs of that type.