"Selected Plugin has been manually removed" - Advice/Help Need

[Deleted2558536User]

I'm suffering from an unusual issue. NMM refuses to check my mods. Half of my mods are unchecked when I go back into NMM.
A message appears saying "The selected plugin has been manually removed. Restart NMM or select again your game on the Game Change Mode to refresh the plugin list." This message appears everytime I check or uncheck an affected mod.
Mods affected so far are EVE, WMK and FO3 Redesigned (Project Beauty). I've tried to find a fix, but have so far been unsuccessful.

I've uploaded two Load Order txt files. LoadOrder_Fallout3_WISH.txt is the Load Order I want to use, and the one I input into NMM. However once I exit NMM, whether be refresh or by restarting the program the Load Order changes to the other txt file, LoadOrder_Fallout3_PROBLEM.txt.

Is there anything I can do?

Extra Information;
-I can run the game, however only the Mods active in the ;LoadOrder_Fallout3_Problem.txt are active, even if I ticked them before starting FO3

Edited April 10, 2013 by Guest

[Deleted2558536User]

Fixed the issue myself.

Due to having installed FO3 mods onto the same PC many years ago, the plugins file in AppData was still remembering those previous mods. I edited the file to include all my new mods, this caused them to remain checked allowing all my mods to be used. In future I'll have to edit each time I add (or remove) a mod.
Not the greatest fix, but its working.

[SoulReaver911]

An alternative to doing what sounds like a pain in the ass workaround every time you mod the game, is to use Fallout Mod Manager, which is here on the Nexus.

 

I've not used NMM before as I've only used FOMM, but I've never had a need to switch. I've seen many a problem on many an occasion in this forum with the NMM that can be resolved by using a different program altogether.