Recently, mods that include Fomod installation options - such as COT for instance - have stopped showing me the options when i install them with NMM which instead installs all the included files to my data directory. This forces me to manually pick up the files I want and create a custom .7z if I want to use NMM installer.
Fomod enabled mods used to install fine until I recently installed SKSE and SkyUI, I don't know if it has anything to do with this but that's the only major change I can think of. SKSE works fine and MCM too - only the mods that use Fomod are causing me a problem.
Other infos: latest NMM version, latest SKSE and SkyUI, and of course latest Skyrim patch (1.9 something I believe).
I'd be grateful for any help, thanks a lot