I have discovered the solution to the problem for me. For some reason, the ninja patch changed to game to recognize only gamepads. Which is why the Enter key on my keyboard or clicking continue would do nothing. In order to fix this I when to Fallout4prefs.ini in either My Games documents or inside of fallout's directory and changed bGamepadEnable=1 to bGamepadEnable=0. Now I can load my game. Hope everyone who has this problem see this.