No, unfortunately you will still need to clean those ESM files (Update, Dawnguard, Hearthfires, and Dragonborn) yourself. To the best of my knowledge - only Bethesda has the ability to fix the dirty edits/ITM records and we all know that isn't going to happen since they've shifted their efforts to FO4 now. Just in case it isn't clear, the USLEEP plugin file will not have to be cleaned just as the separate version of the patches have never needed to be cleaned; we always do that before releasing the patch(es).