Glowing Sea Navmesh Issues

[Tivoko]

I'm having Navmesh Issues in the Glowing Sea at the following locations:
Atlantic Offices, Forgotten Church, Hopesmarch Pentecostal Church, and O'Neill Family Manufacturing.

My load order is as follows:
Fallout4.esm
DLCRobot.esm
DLCworkshop01.esm
DLCCoast.esm
DLCworkshop02.esm
DLCworkshop03.esm
DLCNukaWorld.esm
ccfsvfo4002-midcenturymodern.esl
cceejfo4001-decorationpack.esl
ccbgsfo4045-advarccab.esl
ccfsvfo4003-slocum.esl
ccgcafo4004-factionws04gun.esl
ccgcafo4005-factionws05hrpink.esl
ccgcafo4010-factionws10rr.esl
ccgcafo4011-factionws11vt.esl
ccgcafo4013-factionas02bos.esl
ccgcafo4017-factionas06inst.esl
ccgcafo4018-factionas07mm.esl
ccgcafo4020-factionas09rr.esl
ccswkfo4002-pipnuka.esl
ccswkfo4003-pipquan.esl
cceejfo4002-nuka.esl
cczsef04001-bhouse.esm
cctosfo4001-neosky.esm
unofficial fallout 4 patch.esp
ArmorKeywords.esm
HUDFramework.esm
NAC.esm
AzarPonytailHairstyles.esp
CBBE.esp
Crimsomrider's 1950s Feminine Outfits.esp
CROSS_2077.esp
CROSS_CryoLance.esp
Nuclear Reloaded.esp
ENBLightsHDRPatch.esp
Driveable Motorcycle Mod.esp
EAMR.esp
MiscHairstyle.esp
Ellie remake.esp
EndorsCustomCombatArmor.esp
EndorsCustomCombatArmor_AzarHair.esp
EPO.esp
FlightHelmetFix.esp
Fr4nssonsLightTweaks.esp
Grasslands - Healthy.esp
Headcrab_Bunny.esp
infinite_settlement_budget.esp
LooksMenu.esp
LooksMenu Customization Compendium.esp
MAID_by_Justice.esp
NAC-FarHarbor.esp
NAC-NukaWorld.esp
Nuka World Bot Fixes.esp
Pip-Boy Flashlight.esp
Power Radius 5x.esp
Skip DIMA memories.esp
VKCustom_Cait_V1.esp

I have tried disabling both Nuclear Reloaded and Grasslands. With Nuclear Reloaded uninstalled I was able to access to the O'Neill Family Manufacturing area but not the other areas. With grasslands uninstalled no areas were fixed. Unfortunately I don't think Nuclear Reloaded is being maintained anymore and the author was banned from the nexus a couple years ago so I will have to try and manually fix any problems with it myself. Advice on how to do that would be appreciated, as well as any help finding other culprits that might be bugging the areas out that aren't immediately obvious.