[Stardew Valley] Uploaded collection not including configs

[vortexposer]

I'm not familiar with the game or its folder structure but try using "Unpack (as-is)" install type to extract the mod (rt click on archive) and then should preserve original structure. Or download Picky's Add Custom Mod extension/make your own manually and just drop the files how they need to be, prior to updating collection. It may also need to be set to "replicate" in order to preserve that structure for end-user as well, to apply its load after rule.
 

Edited August 19 by vortexposer

[HeyKatu]

Thanks for the help, the Custom Mod extension seems to have gotten it working!